Hybrid Metaheuristic Optimization with Stacked Sparse Autoencoder for Enhanced Chronic Kidney Disease Detection and Classification

Authors

  • S Manjula Research ScholarDepartment of Computer Science and Engineering, FEAT, Annamalai University, Chidambaram, Tamilnadu, India.
  • N Hema Rajini Department of Computer Science and Engineering, Alagappa Chettiar Government College of Engineering and Technology, Karaikudi, India.
  • K Chokkanathan Department of Artificial Intelligence, Madanapalle Institute of Technology & Science, Madanapalle, Andhra Pradesh-517325, India.

DOI:

https://doi.org/10.24237/djes.2026.19211

Keywords:

Chronic Kidney Disease, Dwarf Mongoose Optimizer, Giant Trevally Optimizer, RMSProp, Metaheuristic Optimization, Medical Diagnosis

Abstract

Chronic Kidney Disease (CKD) is a progressive renal disease that needs to be accurately and early diagnosed to eliminate irreversible damage to the kidney. Nevertheless, traditional methods of diagnosis might not be particularly effective at capturing the complex nonlinear patterns between clinical attributes. The paper offers a Hybrid Metaheuristic Optimization with Stacked Sparse Autoencoder framework as a superior method of CKD detection and classification. The suggested model is based on the combination of Z-score normalization, hybrid Dwarf Mongese Optimizer-Giant Trevall Optimizer based feature selection, deep hierarchical feature representation with Stacked Sparse Autoencoder, and RMSProp-based adaptive optimization. The DMO aspect facilitates exploration of the needed clinical properties globally whereas GTO enhances local optimization of the chosen set of features. The SSAE also trains small sparse representations to minimize redundancy and enhance the interpretability of the diagnoses. The framework was tested on the UCI CKD dataset of 400 patient records having 24 clinical attributes. The proposed hybrid optimization model achieved an accuracy of 99.25%, precision of 99.10%, recall of 99.40%, specificity of 99.05%, F1-score of 99.25%, MCC of 0.985, AUC of 0.997, and an error rate of 0.75%. The proposed model had a higher accuracy of 1.75% and 0.85 when compared with XGBoost+BSO and Two-Tier ACBPNN, respectively. These findings validate the hypothesis that hybrid feature-selection and sparse deep-representation enhance the diagnostic reliability, misclassification, and enable interpretable CKD screening. The suggested framework has a high potential to be a clinical decision-support model of early CKD detection.

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References

[1] M. M. Rahman, M. Al-Amin, and J. Hossain, “Machine learning models for chronic kidney disease diagnosis and prediction,” Biomedical Signal Processing and Control, vol. 87, p. 105368, 2024. https://doi.org/10.1016/j.bspc.2023.10536

[2] P. Gogoi and J. A. Valan, “Machine learning approaches for predicting and diagnosing chronic kidney disease: Current trends, challenges, solutions, and future directions,” International Urology and Nephrology, vol. 57, no. 4, pp. 1245–1268, 2025. https://doi.org/10.1007/s11255-024-04281-5

[3] M. A. R. Rahat, M. T. Islam, D. M. Cao, M. Tayaba, B. P. Ghosh, E. H. Ayon, N. Nobe, T. Akter, M. Rahman, and M. S. Bhuiyan, “Comparing machine learning techniques for detecting chronic kidney disease in early stage,” Journal of Computer Science and Technology Studies, vol. 6, no. 1, pp. 20–32, 2024. https://doi.org/10.32996/jcsts.2024.6.1.3

[4] P. Gogoi and J. A. Valan, “Interpretable machine learning for chronic kidney disease prediction: A SHAP and genetic algorithm-based approach,” Biomedical Materials & Devices, vol. 3, no. 2, pp. 1384–1402, 2025. https://doi.org/10.1007/s44174-024-00262-5

[5] S. S. Vellela, L. R. Vuyyuru, N. M. Purimetla, L. Dalavai, and M. V. Rao, “A novel approach to optimize prediction method for chronic kidney disease with the help of machine learning algorithm,” in Proc. 2023 6th International Conference on Contemporary Computing and Informatics (IC3I), 2023, vol. 6, pp. 1677–1681. https://doi.org/10.1109/IC3I59117.2023.10397974.

[6] C. Choudhary, L. S. Nagra, P. Das, J. Singh, and S. S. Jamwal, “Optimized ensemble machine learning model for chronic kidney disease prediction,” in Proc. 2023 International Conference on Computing, Communication, and Intelligent Systems (ICCCIS), 2023, pp. 292–297. https://doi.org/10.1109/ICCCIS60361.2023.10425073

[7] L. A. Akinyemi, O. P. Oshinuga, S. O. Ekwe, and S. O. Oladejo, “Enhancing chronic kidney disease prediction through data preprocessing optimization and machine learning techniques,” in Proc. 2023 International Conference on Electrical, Computer and Energy Technologies (ICECET), 2023, pp. 1–6. https://doi.org/10.1109/ICECET58911.2023.10389513.

[8] J. S. Alikhan, R. Alageswaran, and S. M. J. Amali, “Self-attention convolutional neural network optimized with season optimization algorithm espoused chronic kidney diseases diagnosis in big data system,” Biomedical Signal Processing and Control, vol. 85, p. 105011, 2023. https://doi.org/10.1016/j.bspc.2023.105011

[9] J. Xiao, R. Deng, X. Xu, H. Guan, X. Feng, T. Sun, S. Zhu, Z. Ye. “Comparison and development of machine learning tools in the prediction of kidney disease progression”, Journal of Translational Medicine, vol. 17, no. 119, 2019 https://doi.org/10.1186/s12967-019-1860-0

[10] P. Yadav and S. C. Sharma, “HFBO-KSELM: Hybrid flash butterfly optimization-based kernel softplus extreme learning machine for classification of chronic kidney disease,” The Journal of Supercomputing, vol. 79, pp. 17146 - 17169, 2023. https://doi.org/10.1007/s11227-023-05337-6

[11] S. M. A. Yousif, H. T. Halawani, G. Amoudi, F. M. O. Birkea, A. M. Almunajam, and A. A. Elhag, “Early detection of chronic kidney disease using eurygasters optimization algorithm with ensemble deep learning approach,” Alexandria Engineering Journal, vol. 100, pp. 220–231, 2024. https://doi.org/10.1016/j.aej.2024.05.011

[12] P. R. V. Terlapu, D. Jayaram, S. Rakesh, M. V. Gopalachari, B. V. Ramana, N. Tangudu, and K. R. Kalidindi, “Optimizing chronic kidney disease diagnosis in Uddanam: A smart fusion of GA-MLP hybrid and PCA dimensionality reduction,” Procedia Computer Science, vol. 230, pp. 522–531, 2023. https://doi.org/10.1016/j.procs.2023.12.108

[13] D. S. Khafaga, N. Khodadadi, E. Khodadadi, A. A. Alhussan, M. M. Eid, El-Sayed El-Kenawy, “Enhanced early chronic kidney disease prediction using hybrid waterwheel plant algorithm for deep neural network optimization”, Scientific Reports, vol. 15, 42584, 2025. https://doi.org/10.1038/s41598-025-26382-6

[14] M. M. Amini, M. I. Mazdadi, M. Muliadi, M. R. Faisal, and T. H. Saragih, “Implementation of extreme learning machine method with particle swarm optimization to classify of chronic kidney disease,” Journal of Electronics, Electromedical Engineering, and Medical Informatics, vol. 6, no. 4, pp. 499–508, 2024. https://doi.org/10.35882/jeeemi.v6i4.561

[15] M. Gokiladevi and S. Santhoshkumar, “Henry gas optimization algorithm with deep learning based chronic kidney disease detection and classification model,” International Journal of Intelligent Engineering and Systems, vol. 17, no. 2, 2024. https://doi.org/10.22266/ijies2024.0430.52

[16] M. S. Arif, A. Mukheimer, and D. Asif, “Enhancing the early detection of chronic kidney disease: A robust machine learning model,” Big Data and Cognitive Computing, vol. 7, no. 3, p. 144, 2023. https://doi.org/10.3390/bdcc7030144

[17] K. Venkatrao and S. Kareemulla, “HDLNET: A hybrid deep learning network model with intelligent IoT for detection and classification of chronic kidney disease,” IEEE Access, vol. 11, pp. 99638–99652, 2023. https://doi.org/10.1109/ACCESS.2023.3312183.

[18] R. H. Aswathy, P. Suresh, M. Y. Sikkandar, S. Abdel-Khalek, H. Alhumyani, R. A. Saeed, and R. F. Mansour, “Optimized tuned deep learning model for chronic kidney disease classification,” CMC-Computers, Materials & Continua, vol. 70, no. 2, pp. 2097–2111, 2022, https://doi.org/10.32604/cmc.2022.019790.

[19] S. Elbedwehy, E. Hassan, A. Saber, and R. Elmonier, “Integrating neural networks with advanced optimization techniques for accurate kidney disease diagnosis,” Scientific Reports, vol. 14, no. 1, p. 21740, 2024. https://doi.org/10.1038/s41598-024-71410-6

[20] D. Saif, A. M. Sarhan, and N. M. Elshennawy, “Early prediction of chronic kidney disease based on ensemble of deep learning models and optimizers,” Journal of Electrical Systems and Information Technology, vol. 11, no. 1, p. 17, 2024. https://doi.org/10.1186/s43067-024-00142-4

[21] C. F. Hsu, T. M. Yu, Y. L. Wu, W-C. Wang, J-S Wang, S-S Chang, “Prediction of advanced chronic kidney disease through retinal fundus images by deep learning,” Scientific Reports, vol. 15, p. 37318, 2025, https://doi.org/10.1038/s41598-025-21366-y.

[22] P. Gogoi and J. A. Valan, “Chronic kidney disease prediction using machine learning techniques: A comparative study of feature selection methods with SMOTE and SHAP,” Multiscale and Multidisciplinary Modeling, Experiments and Design, vol. 8, p. 216, 2025, https://doi.org/10.1007/s41939-025-00806-2.

[23] P. Gogoi and J. A. Valan, “Application of homomorphic encryption in machine learning based chronic kidney disease prediction,” in Proc. 2024 2nd World Conference on Communication and Computing (WCONF), Raipur, India, 2024, pp. 1–6, https://doi.org/10.1109/WCONF61366.2024.10692276.

[24] H. Iftikhar, A. F. Hashem, L. A. Mohamud, A.S. Al-Moisheer, R. I. G. Medina, J. L. Lopez-Gonzales “An intelligent ensemble machine learning model for early detection of chronic kidney disease in aging populations”, Scientific Reports vol. 16, 3021, 2026. https://doi.org/10.1038/s41598-025-32919-6

[25] S. K. Ghosh and A. H. Khandoker, “Investigation on explainable machine learning models to predict chronic kidney diseases,” Scientific Reports, vol. 14, p. 3687, 2024, https://doi.org/10.1038/s41598-024-54375-4.

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Published

2026-06-15

How to Cite

[1]
“Hybrid Metaheuristic Optimization with Stacked Sparse Autoencoder for Enhanced Chronic Kidney Disease Detection and Classification”, DJES, vol. 19, no. 2, pp. 158–170, Jun. 2026, doi: 10.24237/djes.2026.19211.

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